In the default settings of ScanSnap Home, there is no clear notification to users about location of the Microsoft Office files created. (for Windows®)
The Microsoft Office files are displayed in either way:
[View] > [Update the selected folder]
[View] > [Update all folders]
To specify the save destinations of the files to be converted, open the settings window of ABBYY FineReader for ScanSnap v5.5 and select [General Options] > [Edit file names before saving].